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cody
2026-06-08 10:15:36 -07:00
parent 73e5d46c30
commit 867c37696f
15 changed files with 1899 additions and 5 deletions
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run_all.sh
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@@ -18,5 +18,18 @@ Rscript "scripts/01_simulate_icu_data.R"
quarto render "notebooks/01_target_trial_basics.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/02_explore_simulated_data.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/03_why_naive_analysis_is_biased.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/04_inverse_probability_weighting.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/05_treatment_assignment_windows.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/06_censoring_and_ipcw.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/07_full_emulation_pipeline.qmd" --output-dir "../outputs/reports"
quarto render "notebooks/01_target_trial_basics.qmd" --to docx --output-dir "../outputs/reports"
quarto render "notebooks/02_explore_simulated_data.qmd" --to docx --output-dir "../outputs/reports"
quarto render "notebooks/03_why_naive_analysis_is_biased.qmd" --to docx --output-dir "../outputs/reports"
quarto render "notebooks/04_inverse_probability_weighting.qmd" --to docx --output-dir "../outputs/reports"
quarto render "notebooks/05_treatment_assignment_windows.qmd" --to docx --output-dir "../outputs/reports"
quarto render "notebooks/06_censoring_and_ipcw.qmd" --to docx --output-dir "../outputs/reports"
quarto render "notebooks/07_full_emulation_pipeline.qmd" --to docx --output-dir "../outputs/reports"
printf '\nWorkflow complete. Reports are in outputs/reports/.\n'