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tte-surgery/simulations/config/experiments.yml
T
chendun1995andClaude Opus 5.5 383ef89c2a Validation, NCE analysis, per-replicate oracle for landmark/naive, RCT truths script, resumable experiment runner
- W0 harm validation (40 reps): CCW and sequential ITT unbiased for their truths (|z| <= 0.7)
- PVI models fitted separately inside and after the window
- experiments.yml grid (8 worlds x 3 scenarios; designs x V1-V4; NCE; RCTs); smoke run clean

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-27 09:19:59 -04:00

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YAML

# Experiment grids (plan sections 5.2, 7, 9). Run with simulations/run_experiment.R <grid> [--scale draft|final]
main:
worlds: [W0, W1, W1_rho0, W2, W3, W4, W5, WR]
scenarios: ["null", harm, benefit_harm]
designs: [naive, landmark, ccw, seq]
variants: [V1_ignore, V3_random, V4_within] # V1 also yields V2 (cluster-robust SE)
nce: true # negative-control exposure (landmark, CCW), D32/D36
rct: [realistic, ideal]
scales:
smoke: {n_patients: 20000, reps: 1}
draft: {n_patients: 50000, reps: 100}
final: {n_patients: 50000, reps: 500} # to be revisited after the draft (sample size, D25/D29)