Speed-ups (shared PVI fit, clones once, case-control sampled deferred model); final scale 200 reps extending the draft (D51)

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-27 09:31:03 -04:00
parent e1457ccc1e
commit cfc9da2c87
6 changed files with 288 additions and 65 deletions
@@ -8,5 +8,5 @@ main:
  rct: [realistic, ideal]
 scales:
  smoke: {n_patients: 20000, reps: 1}
-  draft: {n_patients: 50000, reps: 100}
-  final: {n_patients: 50000, reps: 500}                     # to be revisited after the draft (sample size, D25/D29)
+  draft: {n_patients: 50000, reps: 100, dir: n50k}
+  final: {n_patients: 50000, reps: 200, dir: n50k}   # extends the draft's replicates 1-100 to 200 (D51)