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D53: landmark on baseline covariates (month-5 version as landmark_m5), NCO-1 depends on PVI-free severity, physician-cluster bootstrap script

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Co-Authored-By: Claude Opus 5.5 <[email protected]>
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chendun1995
2026-10-28 07:20:32 -04:00
co-authored by Claude Opus 5.5
parent fbc417662c
commit 5304c89316
10 changed files with 86 additions and 18 deletions
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reports/draft-report.Rmd
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@@ -25,9 +25,9 @@ VAR <- c(V2_cluster = "Ignore physician (cluster SE)", V3_random = "Random inter
VCOL <- c("Ignore physician (cluster SE)" = "#2a78d6", "Random intercept" = "#eb6834",
"Within-physician (FE)" = "#1baf7a", "Trial (no adjustment)" = "#52514e")
METH <- data.table(
k = c("ccw|A_B1", "ccw|A_B2", "seq|now_not", "landmark|early_none", "naive|early_none",
k = c("ccw|A_B1", "ccw|A_B2", "seq|now_not", "landmark|early_none", "landmark_m5|early_none", "naive|early_none",
"rct_realistic|itt", "rct_ideal|itt", "rct_realistic|as_treated", "rct_ideal|as_treated"),
method = c("CCW, A vs B1 (reference)", "CCW, A vs B2", "Sequential trials, ITT", "Landmark at 6 months",
method = c("CCW, A vs B1 (reference)", "CCW, A vs B2", "Sequential trials, ITT", "Landmark at 6 months", "Landmark, + month-5 severity (suppl.)",
"Naive 'ever early PVI'", "Realistic RCT (n = 240), ITT", "Ideal pragmatic RCT, ITT",
"Realistic RCT, as-treated", "Ideal RCT, as-treated"))
setnames(METH, "k", "key")